conda install updated

jupyterhub_conda.service

@@ -0,0 +1,11 @@
+[Unit]
+Description=JupyterHub
+After=syslog.target network.target
+
+[Service]
+User=root
+Environment="PATH=/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/opt/jupyterhub/bin"
+ExecStart=/opt/jupyterhub/bin/jupyterhub -f /opt/jupyterhub/etc/jupyterhub/jupyterhub_config.py
+
+[Install]
+WantedBy=multi-user.target

setup_apps_conda.sh

@@ -3,6 +3,7 @@
 #variant to use conda insted of pip, not tested
 
 #Src: https://medium.com/swlh/how-to-install-jupyterhub-using-conda-without-runing-as-root-and-make-it-a-service-59b843fead12
+#     https://jupyterhub.readthedocs.io/en/1.2.1/installation-guide-hard.html
 
 set -e
 
@@ -16,43 +17,80 @@ fi
 #    libnvinfer-plugin7=7.1.3-1+cuda11.0
 
 #add public ssh keys
-if [ ! -s "~/.ssh/authorized_keys" ]; then
+#if [ ! -s "~/.ssh/authorized_keys" ]; then
-  cat id_*.pub >> ~/.ssh/authorized_keys
+#  cat id_*.pub >> ~/.ssh/authorized_keys
-fi
+#fi
 
-echo ""
+#echo ""
-echo "Install supermicro system tools..."
+#echo "Install supermicro system tools..."
-apt-get update
+#apt-get update
-apt-get install -y ipmitool && modprobe ipmi_devintf
+#apt-get install -y ipmitool && modprobe ipmi_devintf
+
+apt-get install -y language-pack-de
+
+echo "Install a recent notejs for jupyterhub from nodesource..."
+#src: https://github.com/nodesource/distributions/blob/master/README.md
+curl -fsSL https://deb.nodesource.com/setup_current.x | bash -
+apt-get install -y nodejs npm
+
+echo "create virtualenv and install JupyterHub..."
+python3 -m venv /opt/jupyterhub/
+/opt/jupyterhub/bin/python3 -m pip install wheel
+/opt/jupyterhub/bin/python3 -m pip install jupyterhub jupyterlab
+/opt/jupyterhub/bin/python3 -m pip install ipywidgets
+npm install -g configurable-http-proxy
+
+echo "setup jupyterhub config..."
+mkdir -p /opt/jupyterhub/etc/jupyterhub/
+cp jupyterhub_config_https.py /opt/jupyterhub/etc/jupyterhub/jupyterhub_config.py
+
+echo "setup systemd service..."
+mkdir -p /opt/jupyterhub/etc/systemd
+cp jupyterhub_conda.service /opt/jupyterhub/etc/systemd/jupyterhub.service
+ln -s /opt/jupyterhub/etc/systemd/jupyterhub.service /etc/systemd/system/jupyterhub.service
+systemctl daemon-reload
+systemctl enable jupyterhub.service
+systemctl start jupyterhub.service
+
+echo "jupyterhub.service status:"
+systemctl status jupyterhub.service
 
-#echo "Install a recent notejs for jupyterhub from nodesource..."
-#curl -fsSL https://deb.nodesource.com/setup_current.x | bash -
-#apt-get install -y nodejs npm
 
 echo "Install anaconda..."
-wget -O /tmp/anaconda3.sh https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh
+#wget -O /tmp/anaconda3.sh https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh
-bash /tmp/anaconda3.sh
+#bash /tmp/anaconda3.sh
+curl https://repo.anaconda.com/pkgs/misc/gpgkeys/anaconda.asc | gpg --dearmor > conda.gpg
+install -o root -g root -m 644 conda.gpg /etc/apt/trusted.gpg.d/
+echo "deb [arch=amd64] https://repo.anaconda.com/pkgs/misc/debrepo/conda stable main" | sudo tee /etc/apt/sources.list.d/conda.list
+apt-get update
+apt-get install conda
 
-echo "Install JupyterHub..."
+#symlinking the conda shell setup script to the profile ‘drop in’ folder so that it gets run on login:
-apt-get install -y language-pack-de
+ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
-conda install --yes jupyterhub jupyterlab notebook configurable-http-proxy jupyterlab-git jupyter-server-proxy
+
+mkdir /opt/conda/envs/
+
+/opt/conda/bin/conda create --prefix /opt/conda/envs/python python=3.7 ipykernel
+/opt/conda/envs/python/bin/python -m ipykernel install --prefix /usr/local/ --name 'python' --display-name "Python (default)"
+
+
+#users have to setup there kernel like this:
+#/path/to/kernel/env/bin/python -m ipykernel install --name 'python-my-env' --display-name "Python My Env"
+
+
+#conda install --yes jupyterhub jupyterlab notebook configurable-http-proxy jupyterlab-git jupyter-server-proxy
 #jupyter labextension install jupyter-matplotlib
 
-echo "Setup JupyterHub..."
+#echo "Install Tensorflow..."
-mkdir /etc/jupyterhub/
+#conda install --yes tensorflow-gpu
-cp jupyterhub_config.py /etc/jupyterhub/jupyterhub_config.py
-cp jupyterhub.service /etc/systemd/system/jupyterhub.service
-systemctl enable jupyterhub
-systemctl start jupyterhub
 
-echo "Install Tensorflow..."
+#echo "Install cantera..."
-conda install --yes tensorflow-gpu
+#conda install --yes --channel cantera cantera
 
-echo "Install cantera..."
+#echo "Install common Python libs..."
-conda install --yes --channel cantera cantera
+#conda install --yes h5py tqdm pandas ipywidgets pillow matplotlib ipympl opencv-python
 
-echo "Install common Python libs..."
+#Other tools:
-conda install --yes h5py tqdm pandas ipywidgets pillow matplotlib ipympl opencv-python
 
 #System monitoring
 #echo "Install netdata..."
@@ -61,19 +99,15 @@ conda install --yes h5py tqdm pandas ipywidgets pillow matplotlib ipympl opencv-
 #service netdata restart
 #on http://0.0.0.0:19999
 
-echo "Install gpuview..."
+#echo "Install gpuview..."
-python3 -m pip install gpuview
+#python3 -m pip install gpuview
-gpuview service --host 127.0.0.1 --port 9988
+#gpuview service --host 127.0.0.1 --port 9988
 
-echo "Disable services that delays startup by wating for network connectivity..."
+#echo "Disable services that delays startup by wating for network connectivity..."
-systemctl disable cloud-config
+#systemctl disable cloud-config
-systemctl disable cloud-final.service
+#systemctl disable cloud-final.service
-systemctl disable iscsid.service
+#systemctl disable iscsid.service
-systemctl disable open-iscsi.service
+#systemctl disable open-iscsi.service
-
-
-echo "show gpu state..."
-nvidia-smi
 
 echo ""
 echo "Setup successfully finished"