117 lines
3.9 KiB
Bash
117 lines
3.9 KiB
Bash
#!/bin/bash
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#variant to use conda insted of pip, not tested
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#Src: https://medium.com/swlh/how-to-install-jupyterhub-using-conda-without-runing-as-root-and-make-it-a-service-59b843fead12
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# https://jupyterhub.readthedocs.io/en/1.2.1/installation-guide-hard.html
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set -e
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if [ "$EUID" -ne 0 ]
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then echo "Please run as root"
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exit
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fi
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#apt-get install -y --no-install-recommends libnvinfer7=7.1.3-1+cuda11.0 \
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# libnvinfer-dev=7.1.3-1+cuda11.0 \
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# libnvinfer-plugin7=7.1.3-1+cuda11.0
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#add public ssh keys
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#if [ ! -s "~/.ssh/authorized_keys" ]; then
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# cat id_*.pub >> ~/.ssh/authorized_keys
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#fi
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#echo ""
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#echo "Install supermicro system tools..."
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#apt-get update
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#apt-get install -y ipmitool && modprobe ipmi_devintf
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apt-get install -y language-pack-de
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echo "Install a recent notejs for jupyterhub from nodesource..."
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#src: https://github.com/nodesource/distributions/blob/master/README.md
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curl -fsSL https://deb.nodesource.com/setup_current.x | bash -
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apt-get install -y nodejs npm
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echo "create virtualenv and install JupyterHub..."
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python3 -m venv /opt/jupyterhub/
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/opt/jupyterhub/bin/python3 -m pip install wheel
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/opt/jupyterhub/bin/python3 -m pip install jupyterhub jupyterlab
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/opt/jupyterhub/bin/python3 -m pip install ipywidgets
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npm install -g configurable-http-proxy
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echo "setup jupyterhub config..."
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mkdir -p /opt/jupyterhub/etc/jupyterhub/
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cp jupyterhub_config_https.py /opt/jupyterhub/etc/jupyterhub/jupyterhub_config.py
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echo "setup systemd service..."
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mkdir -p /opt/jupyterhub/etc/systemd
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cp jupyterhub_conda.service /opt/jupyterhub/etc/systemd/jupyterhub.service
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ln -s /opt/jupyterhub/etc/systemd/jupyterhub.service /etc/systemd/system/jupyterhub.service
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systemctl daemon-reload
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systemctl enable jupyterhub.service
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systemctl start jupyterhub.service
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echo "jupyterhub.service status:"
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systemctl status jupyterhub.service
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echo "Install anaconda..."
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#wget -O /tmp/anaconda3.sh https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh
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#bash /tmp/anaconda3.sh
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curl https://repo.anaconda.com/pkgs/misc/gpgkeys/anaconda.asc | gpg --dearmor > conda.gpg
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install -o root -g root -m 644 conda.gpg /etc/apt/trusted.gpg.d/
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echo "deb [arch=amd64] https://repo.anaconda.com/pkgs/misc/debrepo/conda stable main" | sudo tee /etc/apt/sources.list.d/conda.list
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apt-get update
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apt-get install conda
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#symlinking the conda shell setup script to the profile ‘drop in’ folder so that it gets run on login:
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ln -s /opt/conda/etc/profile.d/conda.sh /etc/profile.d/conda.sh
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mkdir /opt/conda/envs/
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/opt/conda/bin/conda create --prefix /opt/conda/envs/python python=3.7 ipykernel
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/opt/conda/envs/python/bin/python -m ipykernel install --prefix /usr/local/ --name 'python' --display-name "Python (default)"
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#users have to setup there kernel like this:
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#/path/to/kernel/env/bin/python -m ipykernel install --name 'python-my-env' --display-name "Python My Env"
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#conda install --yes jupyterhub jupyterlab notebook configurable-http-proxy jupyterlab-git jupyter-server-proxy
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#jupyter labextension install jupyter-matplotlib
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#echo "Install Tensorflow..."
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#conda install --yes tensorflow-gpu
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#echo "Install cantera..."
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#conda install --yes --channel cantera cantera
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#echo "Install common Python libs..."
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#conda install --yes h5py tqdm pandas ipywidgets pillow matplotlib ipympl opencv-python
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#Other tools:
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#System monitoring
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#echo "Install netdata..."
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#wget -O /tmp/netdata-kickstart.sh https://my-netdata.io/kickstart.sh && sh /tmp/netdata-kickstart.sh
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#echo "nvidia_smi: yes" >> /usr/lib/netdata/conf.d/python.d.conf
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#service netdata restart
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#on http://0.0.0.0:19999
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#echo "Install gpuview..."
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#python3 -m pip install gpuview
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#gpuview service --host 127.0.0.1 --port 9988
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#echo "Disable services that delays startup by wating for network connectivity..."
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#systemctl disable cloud-config
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#systemctl disable cloud-final.service
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#systemctl disable iscsid.service
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#systemctl disable open-iscsi.service
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echo ""
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echo "Setup successfully finished"
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