From fac8176cee4a2cc888bd8868f6496ec9869761a1 Mon Sep 17 00:00:00 2001
From: Nicolas <Nicolas@nonan.net>
Date: Tue, 7 Jun 2022 17:55:01 +0200
Subject: [PATCH] conda variant to install apps added

---
 setup_apps.sh       |  6 ++--
 setup_apps_conda.sh | 82 +++++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 85 insertions(+), 3 deletions(-)
 create mode 100644 setup_apps_conda.sh

diff --git a/setup_apps.sh b/setup_apps.sh
index ba48aae..86f0426 100644
--- a/setup_apps.sh
+++ b/setup_apps.sh
@@ -28,9 +28,9 @@ echo "Install JupyterHub..."
 apt-get install -y language-pack-de python3-pip
 python3 -m pip install jupyterhub
 npm install -g configurable-http-proxy
-python3 -m pip install jupyterlab notebook jupyterlab-git
-jupyter labextension install @jupyterlab/server-proxy
-jupyter labextension install jupyter-matplotlib
+python3 -m pip install jupyterlab notebook jupyterlab-git jupyter-server-proxy
+#jupyter labextension install @jupyterlab/server-proxy
+#jupyter labextension install jupyter-matplotlib
 
 echo "Setup JupyterHub..."
 mkdir /etc/jupyterhub/
diff --git a/setup_apps_conda.sh b/setup_apps_conda.sh
new file mode 100644
index 0000000..85b654a
--- /dev/null
+++ b/setup_apps_conda.sh
@@ -0,0 +1,82 @@
+#!/bin/bash
+
+#variant to use conda insted of pip, not tested
+
+#Src: https://medium.com/swlh/how-to-install-jupyterhub-using-conda-without-runing-as-root-and-make-it-a-service-59b843fead12
+
+set -e
+
+if [ "$EUID" -ne 0 ]
+  then echo "Please run as root"
+  exit
+fi
+
+#apt-get install -y --no-install-recommends libnvinfer7=7.1.3-1+cuda11.0 \
+#    libnvinfer-dev=7.1.3-1+cuda11.0 \
+#    libnvinfer-plugin7=7.1.3-1+cuda11.0
+
+#add public ssh keys
+if [ ! -s "~/.ssh/authorized_keys" ]; then
+  cat id_*.pub >> ~/.ssh/authorized_keys
+fi
+
+echo ""
+echo "Install supermicro system tools..."
+apt-get update
+apt-get install -y ipmitool && modprobe ipmi_devintf
+
+#echo "Install a recent notejs for jupyterhub from nodesource..."
+#curl -fsSL https://deb.nodesource.com/setup_current.x | bash -
+#apt-get install -y nodejs npm
+
+echo "Install anaconda..."
+wget -O /tmp/anaconda3.sh https://repo.anaconda.com/archive/Anaconda3-2022.05-Linux-x86_64.sh
+bash /tmp/anaconda3.sh
+
+echo "Install JupyterHub..."
+apt-get install -y language-pack-de
+conda install --yes jupyterhub jupyterlab notebook configurable-http-proxy jupyterlab-git jupyter-server-proxy
+#jupyter labextension install jupyter-matplotlib
+
+echo "Setup JupyterHub..."
+mkdir /etc/jupyterhub/
+cp jupyterhub_config.py /etc/jupyterhub/jupyterhub_config.py
+cp jupyterhub.service /etc/systemd/system/jupyterhub.service
+systemctl enable jupyterhub
+systemctl start jupyterhub
+
+echo "Install Tensorflow..."
+conda install --yes tensorflow-gpu
+
+echo "Install cantera..."
+conda install --yes --channel cantera cantera
+
+echo "Install common Python libs..."
+conda install --yes h5py tqdm pandas ipywidgets pillow matplotlib ipympl opencv-python
+
+#System monitoring
+#echo "Install netdata..."
+#wget -O /tmp/netdata-kickstart.sh https://my-netdata.io/kickstart.sh && sh /tmp/netdata-kickstart.sh
+#echo "nvidia_smi: yes" >> /usr/lib/netdata/conf.d/python.d.conf
+#service netdata restart
+#on http://0.0.0.0:19999
+
+echo "Install gpuview..."
+python3 -m pip install gpuview
+gpuview service --host 127.0.0.1 --port 9988
+
+echo "Disable services that delays startup by wating for network connectivity..."
+systemctl disable cloud-config
+systemctl disable cloud-final.service
+systemctl disable iscsid.service
+systemctl disable open-iscsi.service
+
+
+echo "show gpu state..."
+nvidia-smi
+
+echo ""
+echo "Setup successfully finished"
+
+
+